In this study, levels of Fe, Cu, Cd, and Ni in the sediments and organs of Phragmites australis from three different sites in the Anzali wetland were measured. Heavy metal accumulation was higher in the roots of P. australis than in the shoots and leaves. There was a significant correlation between metal concentrations in roots and sediment. This result showed that the root of P. australis can be used as bioindicator for Fe, Cu, Cd, and Ni. Metal levels in sediment were recorded higher than the interim sediment quality guideline values, and the Cd and Ni content in P. australis were higher than the unpolluted levels in plants. This indicates the necessity for continuous monitoring of the metal levels and also evaluating the hazard risk of heavy metals in aquatic organisms in the Anzali wetland.